WGS sequence for Chromobacterium haemolyticum strain HSC-31F16 - SRA

SRX11406228: WGS sequence for Chromobacterium haemolyticum strain HSC-31F16
1 ILLUMINA (Illumina HiSeq 2500) run: 459,009 spots, 204.9M bases, 127Mb downloads

Design: Genomic DNA libraries were prepared using the Nextera XT Library Prep Kit (Illumina, San Diego, USA) following the manufacturers protocol with the following modifications: input DNA was increased 2-fold, and PCR elongation time was increased to 45 s. DNA quantification and library preparation were carried out on a Hamilton Microlab STAR automated liquid handling system (Hamilton Bonaduz AG, Switzerland). Pooled libraries were quantified using the Kapa Biosystems Library Quantification Kit for Illumina. Libraries were sequenced using an Illumina sequencer (HiSeq 2500) using a 250bp paired end protocol. Reads were adapter trimmed using Trimmomatic 0.30 with a sliding window quality cutoff of Q15. De novo assembly was performed on samples using SPAdes version 3.7.

Submitted by: Sierra College

Study: Characterization of violacein-producing bacteria and related species.

PRJNA603836 • SRP327038 • All experiments • All runs

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Isolates were obtained primarily by undergraduate students collecting environmental samples from a variety of habitats including fresh-water, soil and plant surfaces.

Sample:

SAMN13942215 • SRS9449949 • All experiments • All runs

Organism: Chromobacterium fluminis

Library:

Name: 28874_HSC31F16

Instrument: Illumina HiSeq 2500

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Runs: 1 run, 459,009 spots, 204.9M bases, 127Mb

Run	# of Spots	# of Bases	Size	Published
SRR15096377	459,009	204.9M	127Mb	2021-07-10

ID:: 15260600

SRA

Sequence Read Archive

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